Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015914309.1_cds_XP_016464326.1_57374
CDS Infomation

[gene=LOC107787291] [db_xref=GeneID:107787291] [protein=sister-chromatid cohesion protein 3 isoform X3] [partial=3'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016464326.1] [location=join(27257..27301,27395..27569,29529..29641,30036..30176,30386..30549,30626..30862,30954..31098,31196..31374,31479..31621,31702..31829,33132..33293,33375..33575,33649..33786,33859..34053,34180..34324,35995..36101,36237..36374,36872..37134,38633..>38757)] [gbkey=CDS]
Sequence

ATGGAGGAGGAACCAGTGGTGTCGGGAACGGCGAATCGCCGTACGAAACGAACGAGAGTT
CAAACTAGGGTTAACGAGGAGCAAAATGTGAATGAGGAGAGAGAAGAATCGTCCGACGAT
TTTGAAGAATCTCGTGGTAGAGCTAAGCGGAGTAAGGCTGTAGCAGGCACTTCAGCTGCT
GCGGCTGCTGCTTCTAGAAATGCTCATCTCAGTTTAATTGATGTTGTCAAAGGTGATAGG
AGACTAATTCCTCTAGTGGTTAAGCATTGGGTGGAACACTATGAGAAGAACCCGAAAGCC
GCAATAGCTGGACTCTTGAGCATGATGTTTGAGGCCTGCGGAGTAAAATATCATATTGAA
GAAGATTTCTTGGACCAAACTGATGTTGATGATGTAGTAGTTGCTCTTGTAAACATGGCT
AAGAGGGTATTTTCATCCATCATATTCATGAGATTTTCTTACTTAATATGTCTGGGTGAA
GTTGAAGATTATCAAAGTTCAAAAAAGAAGGACTTCAACAACTTCAAAGATAACCTTGTC
TACTTCTGGGATACTTTGGTTGCTGAATGTGAAAATGGACCACTTTTTGATAAGGTCTTG
TTTGACAAGTGCATGGACTATGTGATTGCACTATCGTGCACCCCTCCTAGAGTATATCGT
CAGGTTGCTTCATTAATGGGGCTACAACTTGTTACATCCTTTATACACGTTGCCAAAGTT
CTTGGTGCGCAGCGCGAAACCACTCAGAGGCAGCTAAATGCTGAAAAGAAGAAGAAAGTG
GATGGGCCTCGAGTTGAATCACTAAATAAAAGATTATCCTTGACCCATGAAAAGATAACA
ATAATAGAGGAGATGATGCGGAAGATATTTACCGGGCTATTTATGCACCGTTATCGAGAT
GTCGAACCGGATATCAGAATGGCATGCATACAGTCATTGGGTGTTTGGATCCTGTCATAC
CCCTCCCTGTTTTTGCAGGATTTGTATTTGAAATATCTTGGATGGACATTGAATGATAAA
AGTCATGGTGTAAGGAAGGCTTCAGTCCTTGCACTGCAAAATCTTTATGAGGTGAATGAT
AATGTTCCATCTCTTGGCCTTTTCACGGAGAGGTTTTATAAAAGAATGATCGAGCTTGCT
GATGATGTTGATATTTCTGTGGCAGTATGTGCTATAGGACTTGTGAAACAACTGATAAGA
CATCAACTTGTTCCCGAGGAAGAATTAAGTTCATTATATGATTTGCTAATTGATGATCCA
CCAGATATCAGGCGTGCCATTGGAGCACTAGTGTATGATAATCTGATTGCCCAGCGATTG
AACAGTTCACAATCTAGTTCAGGGGATAATACTGATTCTTCTGAGGTTCATCTGAGTAGA
CTGCTGCGCATATTGAGAGAGTTCTCAAAAGACGAAATGCTGAGCATGTATGTCATTGAT
GATATCTGGGAGTATATGGATGCCATGAAAGAAATGTTTGAAAGTTGTAAACGTGATATA
ACCGTTGCTATGATGAGGAATTATCCGCAGCTTCTTCGCAAATTTATGTCTGACAAAGCA
AAAATTCCTTATCTACTCGAAATCATTGTTCATATGAACCTTGAGCTCTATTCTCTTAAA
AGACAAGATCAGAATTTTAAATCTGCTGTCCTTCTGATGAAAGAGGCATTTTTTAAGCAT
GGTGAGAAGGAAGCTCTGAGATCTTGTGTAAAAGCTGTGGGCTTCTGTGCCACTGAGAGT
CGAGGGGAGTTACAGGACTTTGCCCTTAACAAATTAAAGGAGATTGAGGATGAGCTCATT
GTCAAACTTAAATCTGCAATAAAAGAAGTTGTGGATGGTGATGATGAATATTCACTGCTT
GTTAATTTGAAAAGATTGTATGAACTTCAATTGTCAAGGCAAATTTCCATTGAAAGCTTG
TATAAAGATTTTGCGGAGACTCTTAAAAACTTCAGAAGTATTGATGACGAGGTAATTGGA
TTTCTGCTTCTCAACATGCATCTGCATGTTTGCTGGTGCCTACACTCTATCATAAACTCT
GGCACAGTCCCCGAGCAATCAGTGTCTTCCTTAATTTCCAAGCGCAGTACCTTGTTTAAA
CTACTTGAGTCCTTCCTGACTACTGAATCTCCTGAAGGTCTTCGTGCGAATCATCTTGCA
TGTAGGGTTTGTGTTATTCTTTCAGAACAATGGTGTCTGTTCAGGAAAGCAACCTTTGCT
TCCACTGAGCTAGAAGTTTTGGGGTACTCTCCAGATGAATCCATTCTTCAAAAGTTCTGG
AAGCTTGGTGAACACCAACTACATATTTCAGATGAGACTGAAGAAGATGATTCTAATAGG
GAATACATTGAGGAGACAAATCGAGATGCTATAATCATTGCTGTGGCGAAGTTGGTTGCT
GTTGAGGCAGTTCCTAAGGAGTATCTTGCTCCAGAGATAGTATCTCGTTTCGCGATGCAT
GGAACAAGTGTGTCTGAGGTCATTAAGCATTTGCTAACAGTCTTAAGGAATAAAGGTGCA
GATGTTGCATGTCTGTTCCTAGAGGCACTAAAGAAGGCATATCAACGGTACTTAGTGGTA
CTTTCTTCTGATGATGACAATTCAGCAAGAAAGACATTTCAAGAATGTGAAGATCTTGCG
AGTGAGCTTGCTAAAACTTTTGGAAAGGCTGCTAAAAACAAGCATCGATCAGATGTTCTA
AATATTGTCACAGGAGGCATTCAATATGCCTTTTCAGATGCTCCAGAACATTTATCTTTC
TTAGATGGTGCCGTGCTGCATTTCATATCCAAACTTCCTCCGCCAGATATTATGGACATC
TTGAAAGATGTTGAGAAAAGAACTGAAAATGTTAATATGGATGAAGATCCAAGTGGTTGG
CGACCCTATCATATATTTGTAGACACAGTCTGTGAGAAGTATGCAAAGGATGAAGGTTTA
CAAG

Peptide Sequence

PEP ID

XP_016464326.1
PEP Infomation

PREDICTED: sister-chromatid cohesion protein 3 isoform X3 [Nicotiana tabacum]
Sequence

MEEEPVVSGTANRRTKRTRVQTRVNEEQNVNEEREESSDDFEESRGRAKRSKAVAGTSAA
AAAASRNAHLSLIDVVKGDRRLIPLVVKHWVEHYEKNPKAAIAGLLSMMFEACGVKYHIE
EDFLDQTDVDDVVVALVNMAKRVFSSIIFMRFSYLICLGEVEDYQSSKKKDFNNFKDNLV
YFWDTLVAECENGPLFDKVLFDKCMDYVIALSCTPPRVYRQVASLMGLQLVTSFIHVAKV
LGAQRETTQRQLNAEKKKKVDGPRVESLNKRLSLTHEKITIIEEMMRKIFTGLFMHRYRD
VEPDIRMACIQSLGVWILSYPSLFLQDLYLKYLGWTLNDKSHGVRKASVLALQNLYEVND
NVPSLGLFTERFYKRMIELADDVDISVAVCAIGLVKQLIRHQLVPEEELSSLYDLLIDDP
PDIRRAIGALVYDNLIAQRLNSSQSSSGDNTDSSEVHLSRLLRILREFSKDEMLSMYVID
DIWEYMDAMKEMFESCKRDITVAMMRNYPQLLRKFMSDKAKIPYLLEIIVHMNLELYSLK
RQDQNFKSAVLLMKEAFFKHGEKEALRSCVKAVGFCATESRGELQDFALNKLKEIEDELI
VKLKSAIKEVVDGDDEYSLLVNLKRLYELQLSRQISIESLYKDFAETLKNFRSIDDEVIG
FLLLNMHLHVCWCLHSIINSGTVPEQSVSSLISKRSTLFKLLESFLTTESPEGLRANHLA
CRVCVILSEQWCLFRKATFASTELEVLGYSPDESILQKFWKLGEHQLHISDETEEDDSNR
EYIEETNRDAIIIAVAKLVAVEAVPKEYLAPEIVSRFAMHGTSVSEVIKHLLTVLRNKGA
DVACLFLEALKKAYQRYLVVLSSDDDNSARKTFQECEDLASELAKTFGKAAKNKHRSDVL
NIVTGGIQYAFSDAPEHLSFLDGAVLHFISKLPPPDIMDILKDVEKRTENVNMDEDPSGW
RPYHIFVDTVCEKYAKDEGLQDDKEGTAMRRRGRPPKRQNLQGKKLFNKHTSSEDEESIS
GSDQDADEEKQDDEEEVPLIQSIKSSSKLRSLKISKRAEAM

Transcript Sequence

Gene sequence data has not been registered.